rs55634335 chr1:31714566 A>T
- Sequence
ccgccagacgcacgaaaacaacca[A/T]ataaatcaggcccaggaactccta
- ASB in cell types
- HeLa (cervical adenocarcinoma) EOL-1 (Acute myeloid leukemia) GM12892 (female B-cells lymphoblastoid cell line) neural progenitors
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.20 | 0.35 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Thyroid