rs55639542 chr9:2602036 C>T

Sequence
tcttggggtttatgttctcccagt[C/T]atttccccttctgattctctgttt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
RAD51_HUMAN COE1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD51_HUMAN 3.52 -3.20 2.1·10-91.00 1.00 n/a n/a
COE1_HUMAN 2.95 -4.89 3.0·10-41.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland Thyroid Whole_Blood

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