rs55640412 chr15:40559731 T>C
- Sequence
tctcttctgactcttctttctgtc[T/C]ttcctcagaagctccttctacctg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- TAL1_HUMAN TIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAL1_HUMAN | 1.26 | -0.38 | 2.00 | -0.61 | Weak Concordant | |||
| TIF1A_HUMAN | 1.49 | -0.47 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid