rs55641411 chr3:190322650 C>A
- Sequence
ccctgctcgctttctctcgtggat[C/A]ttctcgctcctgtaaggcgtttca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) gastroesophageal sphincter 22RV1 (prostate carcinoma)
- ASB for transcription factors
- KAISO_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | 2.83 | -2.70 | 1.00 | 0.80 | Weak Discordant |
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Motif analysis
