rs55651740 chr8:9286427 T>C

Sequence
ctgctactgactagtgataaggcg[T/C]tgggtgagtcaacatctctgagcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MAFG_HUMAN KDM1A_HUMAN REQU_HUMAN EMSY_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MAFG_HUMAN 2.29 n/a 2.8·10-61.00 2.00 -0.40 Weak Concordant
KDM1A_HUMAN 2.91 n/a 1.1·10-41.00 2.00 n/a n/a
REQU_HUMAN 2.65 n/a 4.3·10-31.00 3.50 n/a n/a
EMSY_HUMAN 1.93 n/a 8.9·10-31.00 3.00 n/a n/a
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Motif analysis

MAFG_HUMAN Weak Concordant
MAFG_HUMAN pic

Genetic associations

GTEx eQTL Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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