rs556548595 chr10:6108881 C>A
- Sequence
cctgcctggctctgtcacctgagg[C/A]cgcacctggatctcagaatgcagc
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) GM19239 (male B-cells lymphoblastoid cell line) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.32 | 0.48 | 1.22 | -0.43 | Weak Concordant | |||
| STAG1_HUMAN | 1.24 | -0.25 | 1.24 | n/a | n/a |
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Motif analysis
