rs55656828 chr5:151447743 G>T
- Sequence
gagcagtgagttcctccactggct[G/T]ccggctggcggcgctcgccgcctt
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma) HCT-116 (colon carcinoma) GM12891 (male B- cells lymphoblastoid cell line) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MYCN_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.26 | -0.27 | 2.01 | -1.35 | Weak Concordant | |||
| RAD21_HUMAN | 1.63 | -1.37 | 3.30 | n/a | n/a | |||
| MYCN_HUMAN | 3.25 | -3.24 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.39 | 1.55 | 2.00 | n/a | No Hit | |||
| ARI4B_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood