rs55663700 chr19:32570436 C>T
- Sequence
tgcttgcaggagacaccaggactc[C/T]gggcatttggggttccttggagat
- ASB in cell types
- THP-1 (acute monocytic leukemia) CD34+ stem cells-derived erythroblasts CD34+ hematopoietic stem cells K562 (myelogenous leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| THP-1 (acute monocytic leukemia) | 0.68 | 1.03 | 1.00 | |||
| CD34+ stem cells-derived erythroblasts | 2.32 | 0.54 | 2.00 | |||
| CD34+ hematopoietic stem cells | 2.41 | n/a | 2.00 | |||
| K562 (myelogenous leukemia) | 0.66 | 0.09 | 2.00 |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid, Whole_Blood