rs55665824 chr1:3453283 A>G
- Sequence
caggccgggcctcgtcggtgcagt[A/G]cccatcatggactcaggagggcag
- ASB in cell types
- GM19193 (female B-cells Lymphoblastoid Cell Lines) CUTLL1 (T-cell lymphoblastic lymphoma 1) GM19099 (female B-cells Lymphoblastoid Cell Lines) H929 (plasma cell myeloma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.35 | 0.44 | 1.40 | n/a | No Hit | |||
| STAG1_HUMAN | 1.00 | -1.10 | 1.28 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis