rs55674753 chr8:101301659 T>G
- Sequence
aggagccacaggcaagcctcttcc[T/G]ggacacagtcaacagtttgggtgt
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SCRT2_HUMAN ELF1_HUMAN SRF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | -2.94 | 3.18 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -2.94 | 3.10 | 1.00 | 1.79 | Weak Concordant | |||
| SRF_HUMAN | -2.71 | 2.93 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.07 | 1.41 | 2.08 | n/a | n/a |
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Motif analysis
