rs55678639 chr11:70470286 A>G
- Sequence
gacagtgtaaaaataaactatgtt[A/G]tcagctctttagtcttgcagccag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts CD34+ bone marrow cell-derived erythroid progenitors
- ASB for transcription factors
- GATA1_HUMAN MEF2D_HUMAN TAL1_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.45 | -4.22 | 1.67 | -3.96 | Concordant | |||
| MEF2D_HUMAN | 3.34 | n/a | 2.00 | n/a | No Hit | |||
| TAL1_HUMAN | 2.50 | -0.09 | 1.83 | -1.85 | Weak Concordant | |||
| ARI1B_HUMAN | 2.10 | n/a | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | 2.40 | n/a | 2.00 | n/a | n/a |
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Motif analysis
