rs55681475 chr6:138819544 T>A
- Sequence
gatagcaaagactttggtgactct[T/A]ttcatctctagcacttagagccat
- ASB for transcription factors
- ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | -2.24 | 2.36 | 1.00 | 1.58 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Left_Ventricle, Minor_Salivary_Gland, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid