rs55685444 chr5:33470746 C>G
- Sequence
aattacaatggccatatgaatcac[C/G]aggagatggcgttaaaatgcaggc
- ASB in cell types
- K562 (myelogenous leukemia) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- ARI1B_HUMAN CTCF_HUMAN MTG16_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 3.00 | -2.73 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.58 | -0.96 | 2.00 | -4.88 | Concordant | |||
| MTG16_HUMAN | 2.11 | n/a | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | 2.47 | -2.13 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.23 | -0.58 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
