rs55685528 chr8:100950496 C>T
- Sequence
ccggtccgcgtatcgcaaccaccc[C/T]cctccaggctccgcccaagtcgga
- ASB in cell types
- primary B-CLL cells CD14+ monocytes 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.36 | -0.30 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.16 | 0.38 | 1.36 | 0.50 | Weak Discordant | |||
| BRD4_HUMAN | 1.98 | -0.36 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid