rs55708447 chr17:44006699 T>C
- Sequence
tagcacgctgctcactgagctctt[T/C]agcaacaagggtgagggcggtggg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) CD14+ monocytes
- ASB for transcription factors
- SP2_HUMAN ZN341_HUMAN ZNF2_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | -3.26 | 2.26 | 1.50 | n/a | No Hit | |||
| ZN341_HUMAN | n/a | 1.84 | 2.00 | 2.87 | Concordant | |||
| ZNF2_HUMAN | -2.53 | 2.87 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.25 | 1.78 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.07 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood