rs55711164 chr15:65300429 G>A
- Sequence
cggtgagcattacaactctttaaa[G/A]cagcacatctggagttgttccttc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) GM02630 (Fanconi anemi)
- ASB for transcription factors
- IKZF1_HUMAN BRD4_HUMAN SKIL_HUMAN ENL_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 3.19 | 0.07 | 1.83 | n/a | n/a | |||
| BRD4_HUMAN | 2.05 | -0.01 | 1.67 | n/a | n/a | |||
| SKIL_HUMAN | 3.02 | -3.16 | 1.00 | n/a | n/a | |||
| ENL_HUMAN | 3.06 | n/a | 2.00 | n/a | n/a | |||
| TRI22_HUMAN | 2.59 | -2.46 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood