rs55714377 chr9:113512654 T>G
- Sequence
aggtatagctggggtcaggccacc[T/G]gttcccccctcgctgccagggctg
- ASB in cell types
- activated primary CD4+ T cells from blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- HTF4_HUMAN NFKB1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 2.77 | -2.44 | 1.00 | -5.53 | Concordant | |||
| NFKB1_HUMAN | 3.19 | -0.53 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood