rs55720531 chr10:3172553 T>A
- Sequence
ccgaggtcctccggcctcggagcc[T/A]cggatgcgggagctccaggaaggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) iPSC (induced pluripotent stem cells) breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- AP2A_HUMAN ESR1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.69 | -2.48 | 1.00 | 0.48 | Weak Discordant | |||
| ESR1_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.95 | -0.26 | 1.75 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Testis, Whole_Blood