rs55724447 chr4:164935907 A>G
- Sequence
gggctttattcagctgggagcatc[A/G]gcaagctactgccttaaaatccga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ARNT_HUMAN IKZF2_HUMAN RAD51_HUMAN SMCA5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 2.01 | -1.79 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.64 | -1.11 | 1.00 | n/a | n/a | |||
| RAD51_HUMAN | 2.36 | -2.38 | 1.00 | n/a | n/a | |||
| SMCA5_HUMAN | 2.49 | -2.22 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Heart_Left_Ventricle, Lung, Testis, Thyroid