rs55724555 chr2:88001938 C>T
- Sequence
ggatggacaccgcccgcccccccc[C/T]caagaaaagggccaacttaggcaa
- ASB in cell types
- A549 (lung carcinoma) HeLa (cervical adenocarcinoma) MS-1 (Small cell lung carcinoma) MCF10CA1a (breast metastatic epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.16 | 1.84 | 1.51 | n/a | No Hit | |||
| RAD21_HUMAN | -0.56 | 1.77 | 1.71 | n/a | n/a | |||
| SMC3_HUMAN | -0.25 | 1.24 | 1.42 | n/a | n/a |
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