rs55726184 chr14:24365765 G>A
- Sequence
cggtatgtgcgctaggaggcagcg[G/A]agctgagaccgaggccaggcggct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) erythroid cells A549 (lung carcinoma) glioblastoma patient-derived cell model
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.67 | 2.01 | 1.18 | -0.74 | Weak Concordant | |||
| JUN_HUMAN | 0.39 | 1.52 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.33 | -0.56 | 2.33 | 1.90 | Weak Discordant |
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Motif analysis
