rs55728465 chr2:111908519 A>G
- Sequence
cattatcccacattgggtgtttca[A/G]ttcccatgcatgtctttatccttt
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- PBX1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | n/a | 2.03 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.55 | -4.00 | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Spleen, Stomach, Testis, Thyroid, Whole_Blood