rs55730737 chr17:78254696 T>A
- Sequence
cgcggcggagaaccagcgagcccg[T/A]gatgctgaagcagaaggttctgct
- ASB in cell types
- adult erythroblasts K562 (myelogenous leukemia) renal cortex CD14+ monocytes
- ASB for transcription factors
- HCFC1_HUMAN NFAC3_HUMAN CREB1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.51 | n/a | 2.50 | n/a | n/a | |||
| NFAC3_HUMAN | n/a | 3.07 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.76 | -1.58 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.30 | -0.14 | 3.00 | n/a | No Hit | |||
| ETS1_HUMAN | 1.59 | -1.15 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Heart_Left_Ventricle, Lung, Prostate, Testis, Thyroid, Whole_Blood