rs55732276 chr17:72618448 C>T
- Sequence
ctctcccagcccttcagttcatga[C/T]gccttggtgagagaggtctgtata
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor HEK293 (embryonic kidney)
- ASB for transcription factors
- ZBT17_HUMAN ESR1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT17_HUMAN | n/a | 2.08 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.67 | n/a | 2.00 | 1.71 | Weak Discordant | |||
| IKZF2_HUMAN | 1.94 | -0.71 | 1.00 | n/a | n/a |
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Motif analysis
