rs55735645 chr17:76547799 T>G
- Sequence
aatacacacacagacatacacaca[T/G]tcacagagacacacattcacacac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- IKZF2_HUMAN SRF_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.33 | 0.26 | 1.00 | n/a | n/a | |||
| SRF_HUMAN | 1.90 | -1.66 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 2.27 | -2.27 | 1.00 | -2.84 | Concordant |
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Motif analysis
