rs55737604 chr10:132331948 A>C
- Sequence
accgcaagcgcaaccccccgcccc[A/C]gcgcaggcgcaccacaccccgccc
- ASB in cell types
- HepG2 (hepatoblastoma) HMEC (human mammary epithelial cells) HCAEC (human coronary artery endothelial cells) breast tumor
- ASB for transcription factors
- NRF1_HUMAN SMC1A_HUMAN ESR1_HUMAN RUNX1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 3.51 | -3.96 | 1.38 | 1.31 | Weak Discordant | |||
| SMC1A_HUMAN | 2.66 | -1.23 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.54 | -1.75 | 2.00 | n/a | No Hit | |||
| RUNX1_HUMAN | 2.75 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
