rs55737707 chr7:143434905 G>C
- Sequence
cagctcgcttcttgatgacatcat[G/C]aatctgggctccggccaaaggatt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- NFIC_HUMAN ESR1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | 2.59 | n/a | 1.50 | n/a | No Hit | |||
| ESR1_HUMAN | 2.73 | n/a | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -3.78 | 2.06 | 1.50 | 0.67 | Weak Concordant |
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Motif analysis
