rs55745320 chr17:81050363 C>T
- Sequence
gtgtcctggtggctgttccctgcc[C/T]gctgtctcctgcattccttccgtg
- ASB in cell types
- HCC-1599(ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SUH_HUMAN CTCF_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SUH_HUMAN | -1.72 | 2.66 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | -0.31 | 1.08 | 1.27 | n/a | No Hit | |||
| SMCA4_HUMAN | -0.10 | 2.04 | 2.50 | n/a | n/a |
Items per page:
1 – 3 of 3