rs55746968 chr5:132962496 T>C
- Sequence
attcgtacttccacttcctgaaaa[T/C]aatactgtttgtaaacgaaaaggc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) MDM(monocyte derived macrophages) gastroesophageal sphincter
- ASB for transcription factors
- ANDR_HUMAN SPI1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.44 | -4.28 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.84 | 0.25 | 1.53 | n/a | No Hit | |||
| MNT_HUMAN | -1.16 | 2.04 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid