rs55747707 chr7:73623036 G>A

Sequence
cgggaatttgaactttccacacgg[G/A]tccgacgccctggccgatcgggtt
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
ASB for transcription factors
IKZF1_HUMAN C2D1A_HUMAN RBM25_HUMAN ZBTB5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -1.83 2.87 1.003.0·10-7 1.25 n/a n/a
C2D1A_HUMAN 2.76 -2.64 0.011.00 1.00 n/a n/a
RBM25_HUMAN 1.66 -2.89 0.011.00 6.00 n/a n/a
ZBTB5_HUMAN 2.08 -1.60 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI hdl cholesterol,  red cell distribution width,  waist-hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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