rs55759090 chr5:33441297 A>C
- Sequence
tggtgggactcctggaaagtcgga[A/C]ccccctttgggaaccatccattca
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- PRD10_HUMAN EP400_HUMAN BRD4_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | -1.50 | 1.61 | 2.00 | n/a | n/a | |||
| EP400_HUMAN | 0.78 | -0.78 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.51 | 0.50 | 1.59 | n/a | n/a | |||
| ANDR_HUMAN | 2.31 | -1.35 | 1.83 | n/a | No Hit | |||
| TYY1_HUMAN | 1.31 | -0.02 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Vagina, Whole_Blood