rs55761539 chr6:116476221 C>T
- Sequence
tggttacaagtgtagaaagagttg[C/T]tgttatgaaacaggaagtggcagc
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) monocyte-derived dendritic cells Th1-cells MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- SPI1_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.47 | 0.65 | 2.60 | n/a | No Hit | |||
| TBX21_HUMAN | 1.64 | -1.32 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Testis, Whole_Blood