rs55762429 chr8:140598961 C>G
- Sequence
atgacagaaacgcgacaacagagg[C/G]cactttctccaaacccagctctcc
- ASB in cell types
- PANC1 (pancreatic ductal adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line) bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.08 | 2.10 | 1.12 | 3.00 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Testis, Thyroid