rs55763392 chr7:5781731 C>T
- Sequence
gacaggaagaaccatagaggcact[C/T]cgggtactgcggaggagggaccgg
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) TTC-1240 (Rhabdoid tumor of the kidney) COLO-829 (melanoma)
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN CDN1B_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.36 | 0.36 | 1.39 | n/a | No Hit | |||
| JUN_HUMAN | 2.81 | -0.44 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 2.13 | -1.02 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.81 | -0.41 | 1.10 | n/a | n/a | |||
| BRD2_HUMAN | 2.24 | n/a | 1.00 | n/a | n/a |
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