rs55769230 chr19:52735112 G>A
- Sequence
aagtgggaggtaggcggggcctgg[G/A]cgaggtaggggcggggcgcgaggc
- ASB in cell types
- neural cell GM12891 (male B- cells lymphoblastoid cell line) adrenal gland esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.36 | 0.39 | 1.83 | n/a | No Hit | |||
| RAD21_HUMAN | 2.36 | -0.32 | 1.38 | n/a | n/a | |||
| STAG1_HUMAN | 2.80 | -1.48 | 2.89 | n/a | n/a | |||
| STAT1_HUMAN | 2.34 | n/a | 2.50 | n/a | No Hit | |||
| SMC3_HUMAN | 1.61 | -0.11 | 1.40 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid