rs55775354 chr2:151261757 G>A
- Sequence
aggggagacgcgccctcagcggcc[G/A]cagaaagcccacaaccagcggaac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) T-cells primary B-CLL cells
- ASB for transcription factors
- RAG2_HUMAN BC11B_HUMAN ETS1_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAG2_HUMAN | 3.14 | -3.13 | 1.00 | n/a | n/a | |||
| BC11B_HUMAN | -1.39 | 2.15 | 2.25 | n/a | n/a | |||
| ETS1_HUMAN | -0.94 | 1.93 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | -0.45 | 1.82 | 1.00 | n/a | No Hit | |||
| FLI1_HUMAN | -1.98 | 1.70 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood