rs55777123 chr15:97082952 G>A
- Sequence
gttttcgcccctctggtgggtcag[G/A]ggtctctctctgaggagtttccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN IKZF1_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | n/a | 3.56 | 1.50 | 2.51 | Concordant | |||
| IKZF1_HUMAN | -3.46 | 2.15 | 1.50 | n/a | n/a | |||
| NFAC3_HUMAN | -2.24 | 2.36 | 1.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
