rs55782477 chr17:78254622 G>C

Sequence
ccctcgcggcgggcgtgcgcgagc[G/C]tctgcgaacgggccccgtggcacg
ASB in cell types
adult erythroblasts HepG2 (hepatoblastoma) breast tumor GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
HCFC1_HUMAN TYY1_HUMAN STAT1_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HCFC1_HUMAN 1.57 n/a 5.1·10-301.00 2.50 n/a n/a
TYY1_HUMAN 3.12 n/a 7.1·10-41.00 2.00 n/a No Hit
STAT1_HUMAN 2.20 n/a 0.011.00 3.00 n/a No Hit
ESR1_HUMAN 2.90 0.03 0.021.00 1.92 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Heart_Left_Ventricle,  Lung,  Prostate,  Testis,  Thyroid,  Whole_Blood

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