rs55784871 chr8:124262030 T>C
- Sequence
agtttccccagaagcaacttcttt[T/C]tgaacacagtttacctccaactac
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) primary human Th1 T cells
- ASB for transcription factors
- STAT3_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT3_HUMAN | -1.12 | 1.81 | 1.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.22 | 0.86 | 1.50 | -1.30 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Whole_Blood