rs55785541 chr15:100350273 G>A
- Sequence
agcgcttccgtgccccactttccc[G/A]cgtcagcctggctccggcctccac
- ASB in cell types
- MS-1 (Small cell lung carcinoma) pancreas renal cortex THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -1.25 | 1.25 | 1.00 | 3.40 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Hypothalamus, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Thyroid