rs55785723 chr7:105934720 A>G
- Sequence
gagatgggggagctaagcagaggg[A/G]gactggcttggctgcttgaacagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12892 (female B-cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN ZN444_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.07 | 0.65 | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 1.97 | 0.18 | 1.22 | n/a | n/a | |||
| STAG1_HUMAN | 1.50 | 0.10 | 1.04 | n/a | n/a | |||
| ZN444_HUMAN | 2.62 | -2.34 | 1.00 | 2.07 | Discordant |
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Motif analysis
