rs55790676 chr2:9555759 G>T

Sequence
gccgcctactgggaagattctacc[G/T]ccaggctcgacgcccccagaagtg
ASB in cell types
naive IgD+ B cells KB (cervical adenocarcinoma) breast tumor renal cortex
ASB for transcription factors
FOXP1_HUMAN TCF21_HUMAN ESR1_HUMAN RFOX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXP1_HUMAN 2.42 -0.25 3.5·10-41.00 1.80 n/a No Hit
TCF21_HUMAN 1.73 n/a 7.7·10-31.00 2.50 n/a No Hit
ESR1_HUMAN 2.34 -0.13 0.021.00 2.00 n/a No Hit
RFOX2_HUMAN 1.92 -1.01 0.021.00 2.00 n/a n/a
MAX_HUMAN 2.20 -0.17 0.031.00 1.30 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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