rs55793272 chr4:38856861 G>A
- Sequence
aagttcttaaagttgagtaaagcg[G/A]taccttagaaacagattggtgcca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) thyroid gland CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN ZN592_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.60 | -0.33 | 1.80 | 2.41 | Discordant | |||
| ZN592_HUMAN | 2.42 | -2.16 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid