rs55794952 chr19:50376418 G>T
- Sequence
cttcggctggtcctaagcggaccg[G/T]aagttcgtcaagtttcacgctccg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TBX21_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -1.91 | 2.40 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | 0.59 | -0.20 | 1.25 | -5.73 | Concordant |
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Motif analysis
