rs55797083 chr2:240565931 G>T
- Sequence
cccggaaggaagcagccgccggtc[G/T]ccactagtgggtgaggaacagtgg
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN KLF1_HUMAN FOXK2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.06 | 1.82 | 2.50 | n/a | No Hit | |||
| KLF1_HUMAN | 2.87 | -2.67 | 1.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.88 | -3.43 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 1.25 | 0.62 | 1.48 | -1.24 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood