rs55798477 chr2:112841950 A>G

Sequence
tgttgggtgcattttgtcaagtct[A/G]ggacccaggctctgggtgactgat
ASB in cell types
MDM(monocyte derived macrophages) CD14+ monocytes monocyte-derived macrophages from peripheral blood
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 2.12 -0.21 5.3·10-71.00 1.53 n/a No Hit
STAT1_HUMAN 1.97 -1.26 1.1·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Esophagus_Gastroesophageal_Junction,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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