rs55800553 chr20:3173879 C>T

Sequence
ccgcgccctccctgaatcccacgt[C/T]taggaagaggaggaggagcccctc
ASB in cell types
HepG2 (hepatoblastoma) breast tumor
ASB for transcription factors
RBM25_HUMAN ESR1_HUMAN FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN -1.45 2.07 1.002.5·10-4 1.50 n/a n/a
ESR1_HUMAN 2.70 -0.15 0.041.00 2.00 n/a No Hit
FOXK2_HUMAN 2.25 -1.90 0.041.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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