rs55802315 chr1:150166511 C>T

Sequence
caacctccgcctcctgggttcaag[C/T]gattctcctgccccagcctcccta
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
LMBL2_HUMAN ZN770_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
LMBL2_HUMAN -2.16 2.55 1.002.1·10-3 1.00 n/a n/a
ZN770_HUMAN n/a 3.12 1.000.01 2.00 -1.34 Weak Discordant
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Motif analysis

ZN770_HUMAN Weak Discordant
ZN770_HUMAN pic

Genetic associations

EMBL-EBI self-reported math ability,  self-reported math ability (mtag)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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