rs55803185 chr5:138352585 G>A
- Sequence
gctgtcgccccgctccagagcgcg[G/A]ggggcgctgtgcggggcccaggct
- ASB in cell types
- neutrophils from periferal blood E14 retina HEK293 (embryonic kidney) breast tumor
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | 0.59 | 1.21 | -1.85 | Weak Discordant | |||
| ANDR_HUMAN | 2.33 | -0.98 | 1.83 | n/a | No Hit | |||
| ESR1_HUMAN | 2.91 | -0.08 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood