rs55804996 chr13:112971053 A>G

Sequence
tcatactccacttaccacccatta[A/G]cactggcctcttccttcagcacaa
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
GLIS1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GLIS1_HUMAN n/a 1.93 1.003.5·10-3 2.00 -1.53 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

GLIS1_HUMAN Weak Discordant
GLIS1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Liver,  Lung,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

Download